Integrating bayesian layer into n3fit #912
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: All tests NNPDF | |
| # This workflow collects all tests for the NNPDF framework | |
| # the environment and installation steps are shared as they are using | |
| # the custom actions in .github/actions/ | |
| on: [push] | |
| # Define a group based on on branch name (github.head_ref) and .... (github.ref) | |
| # use this group to identify which processes to cancel due to cancel-in-progress | |
| concurrency: | |
| group: ${{ github.head_ref }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| # https://keras.io/getting_started/faq/#how-can-i-obtain-reproducible-results-using-keras-during-development | |
| PYTHONHASHSEED: "0" | |
| NETRC_FILE: ${{ secrets.NETRC_FILE }} | |
| jobs: | |
| run_package_tests: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-14] | |
| python-version: ["3.10", "3.13"] | |
| include: | |
| - os: ubuntu-latest | |
| CONDA_OS: linux-64 | |
| fail-fast: false # continue even if some jobs failed | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/install_conda_pip | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Test n3fit and validphys | |
| shell: bash -l {0} | |
| run: | | |
| pytest --cov=${PWD} --cov-config=pyproject.toml --mpl --pyargs validphys n3fit --mpl-default-tolerance 24 | |
| - name: Keep coverage file | |
| if: startsWith(matrix.python-version, '3.13') | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| include-hidden-files: true | |
| name: coverage-package-${{ matrix.os }} | |
| path: .coverage | |
| regression_tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/install_conda_pip | |
| - name: Run regression tests | |
| shell: bash -l {0} | |
| run: | | |
| pytest --cov=${PWD} --cov-config=pyproject.toml extra_tests/regression_checks.py | |
| - name: Keep coverage file | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| include-hidden-files: true | |
| name: coverage-regression | |
| path: .coverage | |
| conda_tests: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-14] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: # conda requires fetching the history of the repo to prepare the package name | |
| fetch-tags: true | |
| fetch-depth: 0 | |
| - uses: ./.github/actions/prepare_environment | |
| with: | |
| python-version: "3.13" | |
| - name: Build recipe | |
| shell: bash -l {0} | |
| run: | | |
| conda install conda-build --yes | |
| conda build -q conda-recipe --package-format=1 | |
| - name: Keep conda package as artifact | |
| if: ${{ !cancelled() }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| # Uploads package to the workflow, download url available in the action's log | |
| name: nnpdf-package-${{ github.job }}-${{ strategy.job-index }}.tar.bz2 | |
| path: ${{ env.CONDA }}/envs/*/conda-bld/noarch/*.tar.bz2 | |
| run_pytorch: | |
| runs-on: ubuntu-latest | |
| env: | |
| KERAS_BACKEND: torch | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.13" | |
| - name: Install nnpdf without LHAPDF | |
| shell: bash -l {0} | |
| run: | | |
| sudo rm -rf /opt/hostedtoolcache/Python/{3.9*} | |
| sudo rm -rf /opt/hostedtoolcache/CodeQL | |
| pip install .[nolha,torch] | |
| # Since there is no LHAPDF in the system, initialize the folder and download pdfsets.index | |
| lhapdf-management update --init | |
| - name: Test we can run one runcard | |
| shell: bash -l {0} | |
| run: | | |
| cd n3fit/runcards/examples | |
| n3fit Basic_runcard.yml 4 | |
| cat Basic_runcard/nnfit/*/Basic_runcard.json | |
| - name: Test we can still run postfit | |
| shell: bash -l {0} | |
| run: | | |
| output=$(vp-get fit NNPDF40_nnlo_like_CI_testing_250616) | |
| fit_path=$(echo $output | grep -o "PosixPath('.*')" | cut -d"'" -f2) | |
| mv ${fit_path} . | |
| postfit 50 NNPDF40_nnlo_like_CI_testing_250616 | |
| run_jax: | |
| runs-on: ubuntu-latest | |
| env: | |
| KERAS_BACKEND: jax | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.13" | |
| - name: Install nnpdf without LHAPDF | |
| shell: bash -l {0} | |
| run: | | |
| pip install .[nolha,jax] | |
| # Since there is no LHAPDF in the system, initialize the folder and download pdfsets.index | |
| lhapdf-management update --init | |
| - name: Test we can run one runcard | |
| shell: bash -l {0} | |
| run: | | |
| cd n3fit/runcards/examples | |
| n3fit Basic_runcard.yml 42 | |
| cat Basic_runcard/nnfit/*/Basic_runcard.json | |
| full_coverage: | |
| needs: [run_package_tests, regression_tests] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/actions/install_conda_pip | |
| with: | |
| nnpdf-extras: "" | |
| - name: Install coverage | |
| run: pip install coverage | |
| - name: Download reports | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: reports | |
| - name: Merge and show | |
| run: | | |
| coverage combine reports/**/.coverage | |
| coverage report -i |