From 3c846f778743d4f499c546ce1fe475cc403d3d74 Mon Sep 17 00:00:00 2001 From: "repo-helper[bot]" <74742576+repo-helper[bot]@users.noreply.github.com> Date: Fri, 16 May 2025 09:10:09 +0000 Subject: [PATCH] Updated files with 'repo_helper'. --- .github/workflows/flake8.yml | 2 +- .github/workflows/mypy.yml | 6 +++--- .github/workflows/python_ci.yml | 1 + .github/workflows/python_ci_linux.yml | 11 +++++++---- .github/workflows/python_ci_macos.yml | 19 ++++++++++--------- .pre-commit-config.yaml | 4 ++-- .readthedocs.yml | 2 +- README.rst | 2 +- doc-source/index.rst | 2 +- 9 files changed, 27 insertions(+), 22 deletions(-) diff --git a/.github/workflows/flake8.yml b/.github/workflows/flake8.yml index 0a8c0c3..af1b394 100644 --- a/.github/workflows/flake8.yml +++ b/.github/workflows/flake8.yml @@ -16,7 +16,7 @@ permissions: jobs: Run: name: "Flake8" - runs-on: "ubuntu-20.04" + runs-on: "ubuntu-22.04" steps: - name: Checkout 🛎️ diff --git a/.github/workflows/mypy.yml b/.github/workflows/mypy.yml index 0ef581c..e89f4e8 100644 --- a/.github/workflows/mypy.yml +++ b/.github/workflows/mypy.yml @@ -20,7 +20,7 @@ jobs: strategy: matrix: - os: ['ubuntu-20.04', 'windows-2019'] + os: ['ubuntu-22.04', 'windows-2019'] fail-fast: false steps: @@ -43,7 +43,7 @@ jobs: python-version: "3.8" - name: Install dependencies (Linux) 🔧 - if: ${{ matrix.os == 'ubuntu-20.04' && steps.changes.outputs.code == 'true' }} + if: ${{ matrix.os == 'ubuntu-22.04' && steps.changes.outputs.code == 'true' }} run: | python -VV python -m site @@ -54,7 +54,7 @@ jobs: sudo apt install libhdf5-dev netcdf-bin libnetcdf-dev - name: Install dependencies (Windows) 🔧 - if: ${{ matrix.os != 'ubuntu-20.04' && steps.changes.outputs.code == 'true' }} + if: ${{ matrix.os != 'ubuntu-22.04' && steps.changes.outputs.code == 'true' }} run: | python -VV python -m site diff --git a/.github/workflows/python_ci.yml b/.github/workflows/python_ci.yml index e6d52ae..92d9b8f 100644 --- a/.github/workflows/python_ci.yml +++ b/.github/workflows/python_ci.yml @@ -76,3 +76,4 @@ jobs: with: name: "coverage-${{ matrix.config.python-version }}" path: .coverage + include-hidden-files: true diff --git a/.github/workflows/python_ci_linux.yml b/.github/workflows/python_ci_linux.yml index e67d856..f70cf11 100644 --- a/.github/workflows/python_ci_linux.yml +++ b/.github/workflows/python_ci_linux.yml @@ -19,8 +19,8 @@ permissions: jobs: tests: - name: "ubuntu-20.04 / Python ${{ matrix.config.python-version }}" - runs-on: "ubuntu-20.04" + name: "ubuntu-22.04 / Python ${{ matrix.config.python-version }}" + runs-on: "ubuntu-22.04" continue-on-error: ${{ matrix.config.experimental }} env: USING_COVERAGE: '3.7,3.8,3.9,3.10,3.11,3.12,3.13' @@ -80,11 +80,12 @@ jobs: with: name: "coverage-${{ matrix.config.python-version }}" path: .coverage + include-hidden-files: true Coverage: needs: tests - runs-on: "ubuntu-20.04" + runs-on: "ubuntu-22.04" steps: - name: Checkout 🛎️ uses: "actions/checkout@v4" @@ -122,6 +123,7 @@ jobs: with: name: "combined-coverage" path: .coverage + include-hidden-files: true - name: "Upload Combined Coverage to Coveralls" if: ${{ steps.show.outcome != 'failure' }} @@ -133,7 +135,7 @@ jobs: Deploy: needs: tests - runs-on: "ubuntu-20.04" + runs-on: "ubuntu-22.04" steps: - name: Checkout 🛎️ uses: "actions/checkout@v4" @@ -207,6 +209,7 @@ jobs: $CONDA/bin/conda config --set always_yes yes --set changeps1 no $CONDA/bin/conda update -n base conda $CONDA/bin/conda info -a + $CONDA/bin/conda install conda-forge::py-lief=0.14.1 $CONDA/bin/conda config --add channels bioconda $CONDA/bin/conda config --add channels conda-forge $CONDA/bin/conda config --add channels domdfcoding diff --git a/.github/workflows/python_ci_macos.yml b/.github/workflows/python_ci_macos.yml index b1f8071..8ec82b8 100644 --- a/.github/workflows/python_ci_macos.yml +++ b/.github/workflows/python_ci_macos.yml @@ -18,8 +18,8 @@ permissions: jobs: tests: - name: "macos-13 / Python ${{ matrix.config.python-version }}" - runs-on: "macos-13" + name: "macos-${{ matrix.config.os-ver }} / Python ${{ matrix.config.python-version }}" + runs-on: "macos-${{ matrix.config.os-ver }}" continue-on-error: ${{ matrix.config.experimental }} env: USING_COVERAGE: '3.7,3.8,3.9,3.10,3.11,3.12,3.13' @@ -28,13 +28,13 @@ jobs: fail-fast: False matrix: config: - - {python-version: "3.7", testenvs: "py37,build", experimental: False} - - {python-version: "3.8", testenvs: "py38,build", experimental: False} - - {python-version: "3.9", testenvs: "py39,build", experimental: False} - - {python-version: "3.10", testenvs: "py310,build", experimental: False} - - {python-version: "3.11", testenvs: "py311,build", experimental: False} - - {python-version: "3.12", testenvs: "py312,build", experimental: False} - - {python-version: "3.13", testenvs: "py313,build", experimental: False} + - {python-version: "3.7", os-ver: "13", testenvs: "py37,build", experimental: False} + - {python-version: "3.8", os-ver: "14", testenvs: "py38,build", experimental: False} + - {python-version: "3.9", os-ver: "14", testenvs: "py39,build", experimental: False} + - {python-version: "3.10", os-ver: "14", testenvs: "py310,build", experimental: False} + - {python-version: "3.11", os-ver: "14", testenvs: "py311,build", experimental: False} + - {python-version: "3.12", os-ver: "14", testenvs: "py312,build", experimental: False} + - {python-version: "3.13", os-ver: "14", testenvs: "py313,build", experimental: False} steps: - name: Checkout 🛎️ @@ -76,3 +76,4 @@ jobs: with: name: "coverage-${{ matrix.config.python-version }}" path: .coverage + include-hidden-files: true diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 4db783f..b929981 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -8,7 +8,7 @@ ci: repos: - repo: https://github.com/repo-helper/pyproject-parser - rev: v0.11.1 + rev: v0.13.0 hooks: - id: reformat-pyproject @@ -81,7 +81,7 @@ repos: - id: snippet-fmt - repo: https://github.com/python-formate/formate - rev: v0.7.0 + rev: v0.8.0 hooks: - id: formate exclude: ^(doc-source/conf|__pkginfo__|setup)\.(_)?py$ diff --git a/.readthedocs.yml b/.readthedocs.yml index e928b70..83fc025 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -13,7 +13,7 @@ python: - requirements: requirements.txt - requirements: doc-source/requirements.txt build: - os: ubuntu-20.04 + os: ubuntu-22.04 tools: python: '3.9' jobs: diff --git a/README.rst b/README.rst index 0d9cf7a..40c63f3 100644 --- a/README.rst +++ b/README.rst @@ -109,7 +109,7 @@ PyMassSpec-Plot :target: https://github.com/PyMassSpec/PyMassSpec-Plot/commit/master :alt: GitHub last commit -.. |maintained| image:: https://img.shields.io/maintenance/yes/2024 +.. |maintained| image:: https://img.shields.io/maintenance/yes/2025 :alt: Maintenance .. |pypi-downloads| image:: https://img.shields.io/pypi/dm/PyMassSpec-Plot diff --git a/doc-source/index.rst b/doc-source/index.rst index 3cc48e8..05d6ad2 100644 --- a/doc-source/index.rst +++ b/doc-source/index.rst @@ -114,7 +114,7 @@ PyMassSpec-Plot :last-commit: :alt: GitHub last commit - .. |maintained| maintained-shield:: 2024 + .. |maintained| maintained-shield:: 2025 :alt: Maintenance .. |pypi-downloads| pypi-shield::