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77 followers · 233 following
  • Germany

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AntonieV/README.md

Languages and frameworks:

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  1. NodeRAD NodeRAD Public

    RADSeq tool with Snakemake workflow integration for analysis of RAD sequencing data.

    Python 3

  2. RADSeq RADSeq Public

    About tool NodeRAD (https://github.com/AntonieV/NodeRAD): Analysis of RAD-Seq data as an optimization problem considering sequencing errors and mutation rates.

    TeX 1

  3. snakemake-workflows/chipseq snakemake-workflows/chipseq Public

    ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).

    Python 26 20

  4. snakemake/snakemake-wrappers snakemake/snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 237 203

  5. snakemake-workflows/rna-seq-kallisto-sleuth snakemake-workflows/rna-seq-kallisto-sleuth Public

    A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

    Python 68 45