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Center for Biomedical Image Computing & Analytics (CBICA)

All

79 repositories

NiChart_DLMUSE
Public
Python
•
Other
•6•5•14•2•Updated Dec 7, 2025Dec 7, 2025
DLMUSE
Public
A repository that allows users to apply the DLMUSE method to their brain imaging data.
Python
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Other
•2•14•3•0•Updated Dec 7, 2025Dec 7, 2025
spare_score
Public
Compute SPARE scores to detect characteristic feature patterns
Python
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Other
•7•4•0•1•Updated Dec 7, 2025Dec 7, 2025
DLICV
Public
A repository that allows users to apply the DLICV method to their brain imaging data.
deeplearning medical-image-processing medical-image-analysis imagesegmentation nnunet
Python
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Other
•0•2•0•0•Updated Dec 7, 2025Dec 7, 2025
NiChart_Project
Public
Neuro Imaging Chart of AI-based Imaging Biomarkers
Python
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Other
•8•23•9•0•Updated Dec 7, 2025Dec 7, 2025
NiChart_DLWMLS
Public
Python
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Other
•0•0•1•0•Updated Dec 3, 2025Dec 3, 2025
BIDS_NiChart_DLMUSE
Public
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Dec 3, 2025Dec 3, 2025
NiChart_SPARE
Public
Python
•
Other
•0•0•2•0•Updated Dec 1, 2025Dec 1, 2025
NiChart_DKGP
Public
NiChart Implementation of: Temporal Deep Kernel Regression for Biomarker Trajectories
Python
•1•0•0•0•Updated Nov 24, 2025Nov 24, 2025
DLWMLS
Public
Python
•
Other
•0•0•0•2•Updated Nov 24, 2025Nov 24, 2025
apptainer-examples
Public
Examples of building Apptainer containers for Python, etc.
python hpc containers singularity apptainer
Shell
•0•0•0•0•Updated Nov 20, 2025Nov 20, 2025
MRISnapshot
Public
A QC tool for verification of datasets with MRI images and derived masks
Python
•
MIT License
•1•4•0•0•Updated Oct 24, 2025Oct 24, 2025
DLUAAS
Public
Python
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Other
•0•0•0•0•Updated Sep 2, 2025Sep 2, 2025
NiChart_Visualizations
Public
Repo for any NiChart related downstream analysis scripts (Python/R preferred)
Python
•0•0•0•0•Updated Jul 18, 2025Jul 18, 2025
spare_cvm_score
Public
Compute SPARE-CVM scores to detect characteristic feature patterns
Python
•
Other
•7•0•0•0•Updated Jun 18, 2025Jun 18, 2025
SPARE_SVM
Public
Python
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Other
•0•0•0•0•Updated May 30, 2025May 30, 2025
FigureGenerator
Public
This helps creating high quality figures for use in manuscripts and presentations.
screenshots medical-imaging figure-maker figures screenshot-generator
Python
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Other
•2•12•2•0•Updated May 14, 2025May 14, 2025
CCL_NMF_Prediction
Public
Prediction tool for 7 CCL_NMF component loadings
Python
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MIT License
•1•0•1•0•Updated Apr 28, 2025Apr 28, 2025
BrainMaGe
Public
Brain extraction in presence of abnormalities, using single and multiple MRI modalities
python machine-learning deep-learning pytorch neuroimaging segmentation nih brain-extraction skull-stripping pytorch-lightning
Python
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Other
•8•36•1•4•Updated Mar 21, 2025Mar 21, 2025
slurm_billing_report
Public
Prints out usage and charge for given Slurm account and time period.
Go
•
GNU General Public License v3.0
•2•0•0•0•Updated Dec 6, 2024Dec 6, 2024
GBM_Survival_ReSPOND_2024
Public
MATLAB
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Other
•0•1•0•0•Updated Dec 2, 2024Dec 2, 2024
PredCRD
Public
Python
•1•0•0•0•Updated Nov 21, 2024Nov 21, 2024
NiChart_Viewer
Public
Visualization tool for Neuroimaging Chart (NiChart) imaging descriptors and biomarkers
nichart
Python
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Other
•0•1•0•0•Updated Sep 10, 2024Sep 10, 2024
NiChart_Workflows
Public
HTML
•3•1•1•1•Updated Aug 22, 2024Aug 22, 2024
SurrealGAN
Public
Python
•
MIT License
•13•0•0•1•Updated Jul 19, 2024Jul 19, 2024
NiChart_Website
Public
The Landing page for the NiChart project
visualization machine-learning image-processing neuroimaging neuroimaging-analysis
JavaScript
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Other
•3•1•0•0•Updated May 25, 2024May 25, 2024
NiChart_Harmonize
Public
Statistical harmonization package in NiChart
nichart
Python
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MIT License
•0•1•1•0•Updated May 24, 2024May 24, 2024
TIP
Public
Translational Imaging Pipelines
Python
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Other
•3•1•2•0•Updated Feb 7, 2024Feb 7, 2024
NiChart_Tissue_Segmentation
Public
Brain tissue segmentation using FSL FAST and DLICV
Python
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Other
•0•2•0•0•Updated Feb 2, 2024Feb 2, 2024
niCHART
Public
The neuro-imaging brain aging chart [niCHART] is a comprehensive solution to analyze standard structural and functional brain MRI data across studies. [niCHART] and the associated pre-processing tools implement computational morphometry, functional signal analysis, quality control, statistical harmonization, data standardization, interactive visual
mri neuroimaging aging
Python
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Other
•8•20•17•6•Updated Jan 22, 2024Jan 22, 2024